NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0117901_1155272

Scaffold Ga0117901_1155272


Overview

Basic Information
Taxon OID3300009103 Open in IMG/M
Scaffold IDGa0117901_1155272 Open in IMG/M
Source Dataset NameMarine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 250-2.7um
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGeorgia Genomics Facility
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)1272
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location
Location NameCariaco Basin, Venezuela
CoordinatesLat. (o)10.5Long. (o)-64.66Alt. (m)Depth (m)143
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039706Metagenome / Metatranscriptome163N
F103416Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0117901_11552721F103416AGGAMARTYQYRPIKYTVQDHSGAGQIATAISADVYLVHVSTTVACYIKLEGTAANKDGMLLSANDSITMKTSPSDSVSAYATGAGQIS
Ga0117901_11552722F039706AGGAGMRTLNDYFIMGGNMTAIQTADNASPVCVIPDGGKLKEIYMNVHTVIDANTTFDIMKNGTDTTVDATLANATADETGVALAIGGEVLLAAGDALHIKSNGEQTAATTADVSYVIRR*

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