Scaffold Ga0117901_1108908

Overview

Basic Information

• Taxon OID: 3300009103
• Scaffold ID: Ga0117901_1108908
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 250-2.7um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1618
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014465	Metagenome	263	Y
F024106	Metagenome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0117901_11089082	F014465	N/A	MKPRGMVMIGALVRNCSGIMKIVTGYKCDGKGEHIQFAGDGTTMWYPLGEYEILSTEE*
Ga0117901_11089083	F024106	GGA	MDFQVGDLVTLKHYGTTECPSPIAMVVSLDCLAFDRIKIQFLDGGPPEMAAPRHWKLVSRNEDR*