Scaffold Ga0117901_1073507

Overview

Basic Information

• Taxon OID: 3300009103
• Scaffold ID: Ga0117901_1073507
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 250-2.7um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2129
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005547	Metagenome	397	Y
F010950	Metagenome	297	Y
F053548	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0117901_10735073	F053548	N/A	MKDSGAPSIGDLVVALYDEQRDISCVGLVMETKGIECKILWSSENNPVGWWQRSKLKVVSPSFSSSRKV*
Ga0117901_10735078	F010950	GGAG	MMKIWVVRQTCLYDHDSYVSTHMTEKGALIAAIRAVREDLTGAFDEDELEDMRPGMPHHYAEDLMQYDSKQLRGIVSDWWEYSFHMNEHAQYQIHQTQVEA*
Ga0117901_10735079	F005547	GAGG	MKVWVMQGSYQGELFSSVHLTQKGCALACIADITEFHGIDDDETALSVMNTMYHGETEEYKEPIEWDQEKLKDMTSEQLWKIFNEWSEISWDRMADRSYNLDANHVEIQA*