Scaffold Ga0117901_1048547

Overview

Basic Information

• Taxon OID: 3300009103
• Scaffold ID: Ga0117901_1048547
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 250-2.7um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2837
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD8-C175 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032270	Metagenome	180	Y
F057285	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0117901_10485474	F057285	AGG	MNKSKGLIFTINTRNKSYNLLEQVYKDFGVVFHPKTTVDSVANFVKEKKQDAKATTEASGKVRQDNSERTGLVGKAEKDKVQQKSFSMEDTQRKISSSFSNLKRER*
Ga0117901_10485476	F032270	N/A	MPKLIPKAKKLAFMCAKCFNTKVDKLAWFVGSTLYNESLLCRTCWQGQFNKLTEKQRKEWAFYANKKPR*