Scaffold Ga0117901_1034893

Overview

Basic Information

• Taxon OID: 3300009103
• Scaffold ID: Ga0117901_1034893
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 250-2.7um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3548
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011853	Metagenome	286	Y
F040136	Metagenome / Metatranscriptome	162	Y
F042929	Metagenome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0117901_10348933	F011853	AGGAG	MTPDDIKKKREMLVKQHNTLKEKIDEGKTAIANMQAQLNGLVGAVQLCDDFLNNPEDPKKDK*
Ga0117901_10348934	F042929	N/A	MEVWDPKDKTTVLSQIKKAINTPVSGFKRMTRVIVWSILIVFYFFIFTLLLSGCAYFQKEKKDEIIITNLPPKEFICTKIDCGDEDVDELIEKEKNTIACIKLQPECDLDK*
Ga0117901_10348935	F040136	GAG	MEEGSVAGPGTSVGINKIKRGTSMAKTGRPVKWTNKELNDVKSLVEDKFSTSKIAKIFGTTKNAIIGALYRDKIRNGYVPSKDSKYTGPKNL*