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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009103 Open in IMG/M |
| Scaffold ID | Ga0117901_1022928 Open in IMG/M |
| Source Dataset Name | Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 250-2.7um |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Georgia Genomics Facility |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4727 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 9 (81.82%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Cariaco Basin, Venezuela | |||||||
| Coordinates | Lat. (o) | 10.5 | Long. (o) | -64.66 | Alt. (m) | Depth (m) | 143 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F012401 | Metagenome / Metatranscriptome | 281 | Y |
| F012463 | Metagenome | 280 | Y |
| F014127 | Metagenome | 265 | Y |
| F048570 | Metagenome | 148 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0117901_10229284 | F048570 | GGAGG | MKVGDLVRCRPRNERENYDEWLGLIIGYGMSGQHTVQWICSDGRGHVEEVNHTPQELELVNESR* |
| Ga0117901_10229285 | F012463 | GGAG | MKVGDIVKLIAEPSVDWMFNYLEETFQVLDFPTENGVELKMIGTVPDWIWIIGKDNLEVTEEQKNET* |
| Ga0117901_10229287 | F012401 | GGAGG | MIDGILSLEKAALERLTEDRIASGSLGEEVEEVLSAAGIYWDTLNQEYFSIDAFQRETFERLAAEYVSKDYS* |
| Ga0117901_10229289 | F014127 | N/A | MEEGTTMLERINNVMGRISIAGDESDWDFGFMQSLEEQLKTRGSLSPRQEEILQQVEGRWSDEALKTRANWANDWDDEKEEKFNIALQYYRKTGYYGNIVWKYLTTEGIRCAGTPSQKEYNKLVLNKYASGVIRNMQSEPKFPVGGTAVFRTGARSHRGKPCVILKHGDITDVSTHAKGAKPVQVLPIGSAAPIWTEERWLKKAKKKK* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |