Scaffold Ga0117901_1013183

Overview

Basic Information

• Taxon OID: 3300009103
• Scaffold ID: Ga0117901_1013183
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 250-2.7um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 7021
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015401	Metagenome / Metatranscriptome	255	Y
F044733	Metagenome	154	N
F097499	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0117901_10131831	F044733	AGGA	MANHGRTFVKGANTLVILNTVKLDPNSKAYKKTIANSQGMLTGNPDIYQDTTKLMNTKVARKLGYIK*
Ga0117901_101318316	F015401	GAG	MKTTQDNILNVTYDSSLGMYRILIDKLTEYDYNGDMAVVKKICTVISPDHTPMIFNVSPYTSLVDMHTMVRVWIDCGCPSDCNDIGIPRKWDKDSLHAWVAG*
Ga0117901_10131836	F097499	AGGA	MSYYPKVVSDKMKKGLETELQKICEIGKVLRELGNSRTEVNYYMSVDEDFIPDVLSCYNYKG*