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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009103 Open in IMG/M |
| Scaffold ID | Ga0117901_1010193 Open in IMG/M |
| Source Dataset Name | Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 250-2.7um |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Georgia Genomics Facility |
| Sequencing Status | Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8423 |
| Total Scaffold Genes | 28 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (75.00%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Cariaco Basin, Venezuela | |||||||
| Coordinates | Lat. (o) | 10.5 | Long. (o) | -64.66 | Alt. (m) | Depth (m) | 143 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013357 | Metagenome | 272 | Y |
| F029400 | Metagenome | 188 | Y |
| F029601 | Metagenome | 188 | Y |
| F034892 | Metagenome | 173 | Y |
| F064629 | Metagenome | 128 | Y |
| F084099 | Metagenome | 112 | Y |
| F100958 | Metagenome | 102 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0117901_10101932 | F100958 | AGGAG | MVFHGDYEVEFEIYEQKEGDWRSHLLGYMSGADALDAKLRWVEAHKTPPEKFDKIVALFPLKEWK* |
| Ga0117901_101019321 | F029601 | N/A | MMEVGQLVRLCSPNDKFDGEKGIVLRVVKGNTYTCGFHYEVQTFTGYTIVALSFELERLENEYQIPT* |
| Ga0117901_101019324 | F029400 | AGGTGG | MKIGDLVTFCPEAWGTPLEDRPLGVVVDVTLDDAPWPSMVTALFPSDDIPYSSKIEDFEVVNEDW* |
| Ga0117901_101019326 | F084099 | GGAGG | MKIGDIVTMKHALTPERYGLGLIQKIVGPRPQDWRCVYHILWPDDTISCQYENEIVLMGATE* |
| Ga0117901_10101933 | F034892 | N/A | MEIKVGDLVRIRGNDWLGKPLGIVTEIKHLVHDQTRTEYTAITAVVGGKEFTFPDEAFELVNPVESEKS* |
| Ga0117901_10101937 | F013357 | GGAGG | MARARYIPGALVEARNSKYGKGFGIIVAGPWSDTKAASQYRDLANEQAWFKVHWFEKPGNVDAYYMRRGNGQVDMSKNQIKLVRKK* |
| Ga0117901_10101938 | F064629 | GAGG | VTRLYDLYTGVTEEDPYPDRKALRNFTWTDEAISDWEDIWHTLWHLGYKWEWQNSDRYARRYGDTFNLFACHNDAVRLDMAIPLPGIINFYEIRESLLANPGDDHRLDHAVGAVDRWLYKYYTQREALFTEDKLCMNE* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |