Scaffold Ga0117901_1003848

Overview

Basic Information

• Taxon OID: 3300009103
• Scaffold ID: Ga0117901_1003848
• Source Dataset Name: Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 143m, 250-2.7um
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 16734
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (84.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 143

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F029567	Metagenome / Metatranscriptome	188	Y
F035963	Metagenome	171	Y
F059346	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0117901_10038484	F059346	N/A	METILHNAWSLFVAIGWFFLNRITAKVDALEKEKADVSAVKANSGLIHEGDKRIDNIQHTSVPRSEYKYDIASLHNRLNEMEKSKEDKIQAIRLIENRKETSGKTK*
Ga0117901_10038485	F035963	AGGA	VEKLNELVLATTASFAAMGVWFFKRLFKSIDIAHERIDKLESQQVDRTYLETQLAPIRQDLNIILQHLLENKNNG*
Ga0117901_10038487	F002078	GGAG	MDAFMGQEWFQIVGEIVLVFTAITGSLPDRWVQKIPVLSTLWPIFNWLAGNIFNNLNHPKGMAAAKEVEQEIDKAKAEVRERDGLPDVLNGV*
Ga0117901_10038488	F029567	AGTAG	MAAPAANFGLGLYNADDYYSKECMWYEKVEFSPQTKEWLKDNNPPELVVKDLGKVARNNDIYKEVCDE*