NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114948_11475796

Scaffold Ga0114948_11475796


Overview

Basic Information
Taxon OID3300009102 Open in IMG/M
Scaffold IDGa0114948_11475796 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Mariana Trench to uncover new lineages of life (NeLLi) - CR04 metaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)540
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameMariana Trench
CoordinatesLat. (o)12.4764Long. (o)144.8648Alt. (m)Depth (m)7939
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007035Metagenome359Y
F037257Metagenome / Metatranscriptome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0114948_114757961F007035N/ARKIMYYILEDVHNSFYTEAIANDEFSSLQAAEKKLQALKELKPKGKYFIVTRVQA*
Ga0114948_114757962F037257AGGAMKKFTIDISHASPAQLATIALELKIMSNSWEKFGPRIMINKQAVQPPQLRMTSTDTINKRPRKRHKLAMFL*

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