Basic Information | |
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Taxon OID | 3300009100 Open in IMG/M |
Scaffold ID | Ga0075418_10754506 Open in IMG/M |
Source Dataset Name | Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1050 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Tennessee | |||||||
Coordinates | Lat. (o) | 35.8443 | Long. (o) | -83.9607 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F020506 | Metagenome | 223 | Y |
F061023 | Metagenome | 132 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0075418_107545061 | F020506 | AGG | VETLRQILDRWDERGLVARDRLLGFVWAAPTPRALRLVGLDVRPWSFVIPQLAYVHAVGVVRLAIEPSIPEGGRWVSERELRREAGKRQVPDGAVELPDDPDGEAGSGLYGQDVDPLPRRVAVEVELTRKPAARLRENWQRPRHGRWTRTVYYAPPEVASYLDRQVERIQPRHPITVRPLPEVPGVSYPR |
Ga0075418_107545062 | F061023 | AGGAGG | LPEEGFFRAARSRPGPRVHAGRPGSSRRPRWDSDAGITERDVAALVWLGQQYAARSDVLRVLLGRLSPGSPRVAG* |
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