Scaffold Ga0105245_10000797

Overview

Basic Information

• Taxon OID: 3300009098
• Scaffold ID: Ga0105245_10000797
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28589
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (62.50%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030915	Metagenome / Metatranscriptome	184	N
F033237	Metagenome / Metatranscriptome	178	Y
F034654	Metagenome / Metatranscriptome	174	Y
F050293	Metagenome	145	Y
F068158	Metagenome / Metatranscriptome	125	Y
F075221	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105245_1000079717	F068158	AGGA	MKVTSDRIKARAQQLRNNGFKLSGSMVRSTLEMNAGARTLHPQKETSAVGEEEKAESAATKQKDTEAA*
Ga0105245_1000079718	F033237	AGGA	MPKTERSQNYRANGRSNVRVLHFPATTPMPAPSDGDADALADSIRKAWTQKSSNTRQASGSNPGQLRLVDGKI*
Ga0105245_100007973	F075221	N/A	MAANTPDICYVACFTEDDGVYSCGHHHPTVREAMNCLVPDGGSFIRAYDSGICRSLSNREFIDFLESLEQMPWSHRSKAQGNGLTVPTGNAAK*
Ga0105245_100007974	F050293	GGAG	MKPGWRKLCLPLLMAFSLAVMAQSKTPVADNNKVIEDARHAYYSLRTAGLDEFRATVKPNWELVLKDQLKADPVGAQAGLKLLNGIHFSMLLDEAGKVTVTHHADTEPSTEQQRKGFDDIYSGMDQTINGFFTTWSVFMLNSPFPSPNEEYKLEDLGTQYRLSYKDGTADVVTLMGKNLIITDIKVTSAEFNSSVRPQFVHTPKGFVLTGYDADYKPTSGSGVVKLALKIDHHPVNGLQLLDKLVLDSVMDGTPTHMELAFSDYAVKSH*
Ga0105245_100007976	F030915	GGAG	MPEGYYVPFSAVVDAPYWLYKFGQGPKANNSAGIIPKGGLIHVQGPAAAWGGTHQSAYLMGVGRIIVKIGDFQPAPAVTTNS*
Ga0105245_100007979	F034654	GGA	MNPRAILSGLLLIVAGFCVAAAARNSPKPVSGMHSNMPAGYAVMVLKPSKATLSLIGLIECPELEGAQRVAEGLHKKLVSADGTAVRQFPQRFSFRITASLRKIFVEGPDSSVDVAGDPQELLLNLKFRIRAYNGLQAREIVPQSVEMIGVPADVPYDERVYRINIDTGNLPITDRMIVEIFAPQGELLTHFPFSVL*