Scaffold Ga0105245_10000003

Overview

Basic Information

• Taxon OID: 3300009098
• Scaffold ID: Ga0105245_10000003
• Source Dataset Name: Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 488207
• Total Scaffold Genes: 446
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 224 (50.22%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054123	Metagenome / Metatranscriptome	140	Y
F081682	Metagenome / Metatranscriptome	114	Y
F103772	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105245_10000003209	F103772	N/A	MRIAVLFAALAAAGCASTAVNEPPEPNVVEIVSVPPHASVSLDCGAGTVVKGTTPVRVDVPKYPEVCTMEIGADDYRPLRMKFNRGLVLKQGQPQRVEETHQLDQSASTLDMLLFPLQNLGDRIQNATARKIRADYRLEVKLVPIG*
Ga0105245_10000003359	F054123	AGGA	MNILHAITLAALLHHAPAAPVVTCHTGTVSYRFTGTPGATFTYGGTQYSVPQSGSIELLSEGGDKVYLAASGRTLPLDVWPIDAFGTRTVPLQTTQSTPSSSDSAPIATINN*
Ga0105245_1000000374	F081682	AGCAG	LPYHLALSEVIMKTRILLSLAFALSAVAAFGAQHGVIDHTPPGCMLEGEMAILNVETTDDGVLRAYFRRQGATDWCFVDGKNLGKVSQVTLPKFDNGEAIEYYFVVIDGKRIVAKSPRIYNAKNDHHCDAPFARHAIMLTLECLPPGTNPTSMSAGYAAKTIIGNPPPPSPEKPEQAARIRTIGQ*