Scaffold Ga0111539_10263750

Overview

Basic Information

• Taxon OID: 3300009094
• Scaffold ID: Ga0111539_10263750
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2005
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009343	Metagenome / Metatranscriptome	319	Y
F014991	Metagenome / Metatranscriptome	258	Y
F026513	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0111539_102637501	F014991	AGG	MVAVKEITWEEASAPGFEQTTRQAWRVAVAEIAERAKATLPEANGRVDKAVAIVLNGDVELLEGGKARVASQANGTMEYVVCNGTCECKDFPKAPSGWCKHVRFVHPKLGIRA*
Ga0111539_102637503	F009343	GGA	LHWDTTHAATPGWLLFLDGLPGDAPTMLTGFETRLPREASHAEVVGLIGEMLSRETRHPPQQVQVTPLEDGTGYAFVATYEGSA*
Ga0111539_102637504	F026513	AGG	MLTPSLQNPDDRGKRWLQAKTQQILADSAVALATPRVEDDPSCYWGTGPETSTTLYFLLTGDPEPKTLHFHRGMIMGCGSGRYATQHNAVLFIRRTLKKIGILPV*