Scaffold Ga0111539_10048806

Overview

Basic Information

• Taxon OID: 3300009094
• Scaffold ID: Ga0111539_10048806
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5051
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005242	Metagenome / Metatranscriptome	407	Y
F007983	Metagenome / Metatranscriptome	341	Y
F094562	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0111539_100488064	F005242	AGGAG	MHQAERENVMQQIIVSRNDKEEVWVETPAGNVLAECFFKAPDETPQELEHMGYPQLLHLYPAEEILVGQGIAPEEVEEIFVEA*
Ga0111539_100488065	F007983	AGGAG	MTEAQSAEPFRFLQQEIVLAGEAVETLKRDQRAALDALRLEVEVLKRCLCQVHPELAAQFEAIRATLIREFDPEAS*
Ga0111539_100488067	F094562	GAG	VYQSGAELLGVGLTSPEALQDAERWRDRTLSPLTSYGLDGPRGETRGAYYLRPCTPELYAAVQAGGRSIPYAVNEEGYLAVLDPREA*