Scaffold Ga0111539_10000032

Overview

Basic Information

• Taxon OID: 3300009094
• Scaffold ID: Ga0111539_10000032
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 159626
• Total Scaffold Genes: 138
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 86 (62.32%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022831	Metagenome	212	Y
F056723	Metagenome / Metatranscriptome	137	N
F071380	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0111539_10000032120	F022831	N/A	VDVCRCGVERSRLEALGYNFDLSPVAPGSPSGSTRVTSNAAPGLAGLLVGYRSDAHVSRAWRVVFTLLYLILVGGAGYMVVTYTHLPLPSTKENAQIVSTLEGHTKAAGNSGNAITTFLRLPGTVAVLEPTMTAKDLLKPFSETDLETGFCSASIARQIRYQFPGFYESWPDDKLERVAVEKYPEFQDRMCILSSQFGVNPDDIVKYRLRPRTIVEWTILWSRTALITLVFAMALLNVYYRAIVNRLSG*
Ga0111539_100000324	F071380	AGGAG	MASSIATPSLEKKAEIWKARAQAKQKWLEKALAEKTTNPRQAALRTAWIKRALRVVQQAQFTIKYQTGLVDAYAQHLNALEMTLMSEADQKTSARATAQKGGKQSS*
Ga0111539_1000003271	F056723	N/A	MSPDHVPDDFDWVGAQAKCSTESMFDRLRTRVREDVQNRNGLFGRDDEWKFEFHEEDGEFEVTRVVPAGRSGTRVAAVVRFVRKGTRIHVEGEEVDVEFVAIVTLDATGQCLFAVGEIFYADWQIRRMALEQLFFEESDDAE*