Scaffold Ga0111539_10000003

Overview

Basic Information

• Taxon OID: 3300009094
• Scaffold ID: Ga0111539_10000003
• Source Dataset Name: Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 880006
• Total Scaffold Genes: 777
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 449 (57.79%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere → Populus Root And Rhizosphere Microbial Communities From Tennessee, Usa

Source Dataset Sampling Location

• Location Name: USA: Tennessee
• Coordinates
  • Lat. (^o): 35.8444
  • Long. (^o): -83.9599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001605	Metagenome / Metatranscriptome	664	Y
F002548	Metagenome / Metatranscriptome	549	Y
F004033	Metagenome / Metatranscriptome	456	Y
F018610	Metagenome	234	Y
F092677	Metagenome	107	Y
F094358	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0111539_10000003253	F094358	N/A	MLDLDGLQVAYLGVALAHYLDLETGEIIDLPLDAEAPGEDDRFLRIPTRTPESETEDRRLFVEKLPPSAMRDQLESTIDDWNAFRHVLLEDRKTERQFFNFKNDQATRAIEEWLTSEGIEPSS*
Ga0111539_10000003280	F018610	GGA	MGYQVPMIEVAVTVAMAGLDPEEHFLYLAPYSDRRDGPETVADYVNGRRRFFPMLAGGVPKMVNRDQVLWVRYEKLPAVVDLEETIVERLTILELVDGARIEGVVPTTDRPRELSRLSDVLNDATEEFLRIDADEDTYFVNKAFIRRVIPR*
Ga0111539_10000003306	F004033	AGG	MKNFVVGLVLLMFAVAGFAADRPASPEINPPANGEEWLKLSSTEKLFWSVGYAQGYTEALSKIDVTSGPTSPCASLAVRTERQTSTSGKLSGFELVSGLERFYSEPANTVIPLGSAIRINLLQASGKDAVTIQELIDTARVLGLQAAARPRQ*
Ga0111539_10000003492	F002548	N/A	MPKFEYETHTEPDSAFFERRRLRRVRMIVELTLNLISSDRTVSHREARCLVDCARKAILELFPGFDVRYERIVQPSFSRVLQQRWPEEELSYADPHEMVN*
Ga0111539_10000003495	F092677	N/A	MLLVVLAGACGGQAPIDHQSEWRDVLRHKQAAVAPDASPDQKQVYADSVRAFVVKHPNHGRAVEVWQRLQLEFADDLAEAGRYQDAIRIYRSVLTHHPENDHARSGLALAAARLAVSREGLLALRKGMSHRQVASLLGKPIPGWSVKNRRAGATFEAWYYRTRTGSLAGVYFRDGKVFAAEETSNERLGRLGS*
Ga0111539_10000003620	F001605	N/A	MSDESPRQALPEAQSLAQLPLKILEEVIRQLRSTRNDIIRFGVWNIRNLTDDEFNKTDDRKLFGYFRQDLLETRFLSKGRRIDLVQLWRWFDDQMSGVEPLLVDKREVFLNIQDKDLDKVRKRIEEIQSFLPALRSDDLDGFRRVKYKLRRTVMRLTYDLHHVFKRLEKHRKNIFMTSGAPHPERERLPLEAVVEIPEPPMVEDHEEVDA*