Scaffold Ga0099827_10086838

Overview

Basic Information

• Taxon OID: 3300009090
• Scaffold ID: Ga0099827_10086838
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2457
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017462	Metagenome / Metatranscriptome	240	Y
F017983	Metagenome / Metatranscriptome	237	Y
F057623	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099827_100868382	F017462	AGGAG	MRAFPRFSNDVSAVLGGFLLVVPVYFVTISVLRYDAPGLQFFGSPILILGTLAIAFAVNARSVLSVKLVPEKPPVLNIALSLRMWNVAEIILALLLLSALLTYGFVENFEPRPIK*
Ga0099827_100868383	F057623	AGGGGG	MESVNKQQSFLFRLPLVAVCEWLIVLPATLLLAAAALRMLQPRQYEPARTSWILLEWTATHVSRPGAAMLFIGMPAVVVAAGCSTLLRKCWQDQTLRHDARMMLGILRRRLAFGVLTVAVLLAGTILAAVVAHIITD*
Ga0099827_100868385	F017983	GGAG	MNVICNDRDRIFEDGTPAEWAALEAHAVTCPLCAEEVGAWKSLSIAAQELRDYSDSPSSW