Scaffold Ga0099827_10008576

Overview

Basic Information

• Taxon OID: 3300009090
• Scaffold ID: Ga0099827_10008576
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6440
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044596	Metagenome / Metatranscriptome	154	Y
F046930	Metagenome	150	Y
F051726	Metagenome	143	Y
F102675	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099827_1000857611	F046930	N/A	MEKAPMLGPISIISALAVLLAGAWLLHDGVSARDLLHLQIEIIAGATLLSAGVVCSVLLLRNWIKWKRELGKYREG*
Ga0099827_1000857612	F051726	GGAG	MSPKELQVYRCQNRDCGCEIVVTKTPVEANSNPRCFCGAEMKKPYSPPVIRKLDPDDELAIRLEADRNLAQ*
Ga0099827_100085765	F044596	N/A	MSPDPISLFAKIMVALRLRYRFLNLHYEAAWTDSWTHRRCLHEHQTLMEAAKCAMPRGAGWYVFAVEGDTPRQLSETEDRIVNEFRFGAK*
Ga0099827_100085769	F102675	AGGAG	MRYERQQTIRKELERIPRGLKGSPQNQVRQIVTSQYQHGKSFDESVEIAVTFVRQRHPNFTPTILPSPPRT*