Scaffold Ga0099827_10000407

Overview

Basic Information

• Taxon OID: 3300009090
• Scaffold ID: Ga0099827_10000407
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19101
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (52.63%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014368	Metagenome / Metatranscriptome	263	N
F016387	Metagenome / Metatranscriptome	247	N
F017464	Metagenome / Metatranscriptome	240	N
F022177	Metagenome / Metatranscriptome	215	Y
F029395	Metagenome	188	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099827_1000040711	F014368	N/A	MTQIENALKTETRRSPDTVTRTFRIDRDVDRKMEGLSSEGRVSMNQMANKALRRYVEWEVNAEKFGTVTTSASTIRKFFDYLTIEQAKEMGSWWGENQAPGIITFWFKKFDFDSVLKALEFLGAQYGRAFTSDYAFDGRSHTLIVKHDMGLKASVFYAEAVKAAFSHLGLGTDIFVTDDQVIAISPPDPAHPLNRSYEGAADLKYPTSATSRPIPKLRKGQRAEPDSRDA*
Ga0099827_1000040712	F016387	N/A	MFELKSTPVSSSRSVTRTLRLDEDVEAGIVEMAEREQFSFNLLANRALRKLVEWEDKAGKFGFIQVPTSLVEKVFSILTDEEARELGREAGANTIPEMVLFWFKKFNPENALKALEMIGSYGNAFRLQYTIDGETDTVVLKHDRGPRVSAFYGEMFQSLFKPTGAKLEIHETDDQVVATITRPIVSTANGTRNTQLIPSFPGAKNGRNYKR*
Ga0099827_1000040714	F029395	N/A	MDVMLSSNEKREGPPFSGSREPEADGHLKDLLVNLIDSSKALDVRVWLDGVYTDIDDEQIRGEWMNDRDVYFKVEGRVDKRNGSS*
Ga0099827_1000040715	F022177	AGGA	MMDTRDRIQENYRWTAYMKLKGQTWARKEEEILDEFDGFVQSLRGVGVDYNVIVMVEGGVPRQLRSEYTARDEAKIAREGPGA*
Ga0099827_100004074	F017464	N/A	MLKGSQVLQKTYTYIENVTKESRKALMEEFSQKHKGIAIKSASDTLRQSVLDWFPRRDPMLKLVLEKTSQGKPGDVRMDFLGETKSVHFKVHLHAVFAVNGQSPDSPSFLKEVTLLVDPREFSM*