Scaffold Ga0099828_10001346

Overview

Basic Information

• Taxon OID: 3300009089
• Scaffold ID: Ga0099828_10001346
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16273
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (60.87%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001047	Metagenome / Metatranscriptome	793	Y
F004426	Metagenome	438	N
F028763	Metagenome	190	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0099828_100013461	F028763	GGAG	MQTSQSRDEGLSKATRSKRRIALGVVAIFLGIVSLIGLPSTMYYYGLGVFGGAYGAVMIALGVALIAKKE
Ga0099828_1000134617	F004426	N/A	MRVTAFHYPAEFPCDEQTSPLATRRPSHSARTVHATVDEELRVSTHKSIIKTLGRQYTDAAQFFVELVVNSWMWGEATKVEIRIPENGSLVDYEEWGNGMDMNGLREFLTKGKTTDEGFSSRYKRPIRESYGMGSLAWLTLGRELELQVHRGRFDRTIILTESLIDRHWDATDQSTWKPLRLVQAPLDHDGLRIRIRSLTKNPNPIDVRRALLARANVLALRGYGPFEVYVNGEIVKPEELRSSSLLPVSIATEYGRITGEILILPISKTRVGVTDAGVSVQQKHITCLQHQFFGLDQYRTHGLSRIQGWVNADFLRRLPGGNDFERDSAQWRVFEKAMRGFVRNRVYKFLRQTASRRELRSIQYLNKEIAERLRRSLRRNIEILSRSIAKAKTSPRAGSHPKAKKETSPKEHKGRRAKKHPPDATRSIIRMKDHLLAFDIAHGGDRGQAYVETDKNGVRTIYVNMDHPMWDVEASLSPTKLRYCIRQILERSISEDILPANPATPEEAFSVLDALYNDALA*
Ga0099828_100013468	F001047	N/A	MRETMFDESYNVREVLDDVIERVAMREKLLQTAKQFAEKKKEERFTLAIRQFENLFTDFLRLYQPILDRLRSYREGVQKELSGLRSALATVNGMLEVSRGIEGLAPRLPQLEADGQQLDATIKEKTKAAEKIDDLFNRIRPHQSGNPMSQTRDSYSDVLSGMPKDLFPETPEVTREVGPPRKSAGKS*