Scaffold Ga0099828_10001103

Overview

Basic Information

• Taxon OID: 3300009089
• Scaffold ID: Ga0099828_10001103
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17549
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (52.38%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002498	Metagenome / Metatranscriptome	553	Y
F004048	Metagenome	455	Y
F018336	Metagenome / Metatranscriptome	235	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099828_1000110313	F004048	N/A	MPYWYKQVVWGRLDRYNSTGWMRSTPTIPSKEIVHVPGSLPEAELMLPEFLKGKLSLDEWKILIALHLVRFKAYNQTRMSRLLGKIALAPRGLFFLLLFYIPAAATGGLSGPVLYFPSPIFLIAALWIRRSLRRSLQRREFELDRNVAEQLGTPQVLQVLEKILNLDQIRIPTNLRFPILAGWIAYWNPSVRERTGELSSAPPIDLPRSSRIPRIGLRGRVIFILVGFAIFWGAGLVAGNIYARGETTVVCTDTACSALVVIAAIGFWMAIIGGISIVIWILRRFL*
Ga0099828_1000110314	F002498	AGGA	VKAQERIYRLNRGVESLSKEEHGLFFDAVQRLGLPNEVKLAAVALYLDFKSRPIGEYNADHKNLEIFLIASVSLAAKAMGDLRTDHEFESKMFVSREKLVDAEERIIKSFRVQDSIIPFPDLVSQLTKRQMESMAEGFAERGLVSSSEKAELVRLSYDYLDAAVGKGLTPKMSYRGRAAGIVLKAVRDLELQVSEADIARAAGFDKRSMATNKDVIDALLRDLKSPES*
Ga0099828_100011032	F018336	N/A	VSTCLIEALNAPVFKAGGFIGLAAAEDWNEGKVLEASGMLNKMIPIRRKTGIRAMEALDAILHASSRSRLIAG*