Scaffold Ga0099828

Basic Information
Taxon OID	3300009089 Open in IMG/M
Scaffold ID	Ga0099828_10000309 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	28977
Total Scaffold Genes	28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (57.14%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

28977

Total Scaffold Genes

28 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

16 (57.14%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California, Eel River Critical Zone Observatory
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California, Eel River Critical Zone Observatory

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006617	Metagenome / Metatranscriptome	368	N
F008019	Metagenome	340	Y
F010240	Metagenome / Metatranscriptome	306	Y
F012566	Metagenome / Metatranscriptome	279	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099828_1000030919	F010240	GAG	MRVDYRNETRMQTGSKLFGVRSLPYRKLLATSLREHLSIYILASLSNAFLAASQYLAVYAAAASYLPVDFGTSALITGYGRGAGIVLALLLNSLVFQGILAVLVVTLALGATVKTGWTWVYAFSGVVISGFVGYWLAVEFLIILEWISTLQSNRVDSSDSYSGLFWFGLAASVCYVLMILVLRKSYGKLAETRLADKRSL*
Ga0099828_1000030921	F006617	N/A	MRGEGRDEAANMVGAKPMLLWYVWIRLVDGAWHRLDEISKQLRLPSNAIEWAAKFLCDKGMAERGFEEDEIRLHQGNAKFEDAVRALSSSTKPSK*
Ga0099828_1000030922	F008019	GGA	LGVRKKITVSIVLIIIVALAVGQFTSPQLLPSVGGKYSAIGPYSNRGSWTIMETMRYGRAYLAISISNVTFPRTGIGTDYSLVISDVNQTIANSIVKGFGVRVTGMSIQDSLDGSTSTWGIGNAVSDGVQATSIFFFRTSTNHNLRFTVTFQLYDLLPLGSIPDQTVTTSFNITQTVL*
Ga0099828_1000030925	F012566	N/A	LPSQNVARNFESENLSTEKNRDDNTICKQILDPDPAIRVAAFIEGAEVTGYAETARTKNVLSQSIDLRKRIGFWSSIVTEMARQTDELFGRTESVLITHKGLKMVTIPLSARRSLGLSLDRSADTEKIILKIMTKFDLRSND*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0099828_10000309

Overview

Ecosystem & Geography

Associated Families

Sequences