Scaffold Ga0099830_10140402

Overview

Basic Information

• Taxon OID: 3300009088
• Scaffold ID: Ga0099830_10140402
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1849
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006969	Metagenome	361	Y
F011157	Metagenome / Metatranscriptome	294	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099830_101404021	F006969	N/A	LPMQLQVGDRLADETEEWEVIGRPYTTAGGKNAHVRLQRVGQSGSVEVRTWGAHEKVSVKRANDKAPTP*
Ga0099830_101404022	F011157	AGG	MKAVAVTLALVLAGCAHASGVRYTFTPCNSSFQGAVMACFYEAGIGGPVVGYDFYADSGIIEQHWKRQYESCMFRRGYQQLGGTTTWHPKERFNGVTGWPWPNDPPKSAWTWVRTAGAGDRHYYDAECEP*