Scaffold Ga0099830_10027829

Overview

Basic Information

• Taxon OID: 3300009088
• Scaffold ID: Ga0099830_10027829
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3780
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004003	Metagenome	457	Y
F004349	Metagenome / Metatranscriptome	442	Y
F061378	Metagenome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0099830_100278295	F004349	N/A	MGDVKTSAGAALAVGVLMMTACAPAANGPAKPPTASEMLNKPDQATLKDAHFTLVAHIVSGGVAFDATGDGVIVTKPAQASKFTMTTTIAGQSLRFEEIIIGDREYDLAPDNPRWTVKASTSSNPSSFKGTDAVYLGEDTLAQGKAWHVKAKDASGSPFEAWVRESDGYPLKYASTTQGSTFTATFDHFNTGQTVAAPPASDVQQ*
Ga0099830_100278296	F004003	N/A	MAAAALLAGCGGPGSPLGPPKPQDILAKPVHTSSLKDAHFLVTGKFTNNGATVGLNGDGALLYTSPGAGRFKFQTTVAGQQVSFEDISVNGTDYTLTVPGNGKWVAKASTSGLGPNSFTGTSAFKYVGEESLASGKAWHASANDKDGNPFDAWIRESDGYPLKYVIAQQGNTLTLTFDKYNTGAAIAPPPASQVVNG*
Ga0099830_100278297	F061378	AGGTGG	VQPHRALLILVVAVLTAGCGVPTPAAPPSAKEVLAKPQQSNLKDAHFLVTGKITNNGDTVQLVGDGALVYKPKLAGRFQFTTNVSGQTATIEEISVDGTNYGLTPASPKWVASAS