Scaffold Ga0102812_10482280

Overview

Basic Information

• Taxon OID: 3300009086
• Scaffold ID: Ga0102812_10482280
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 677
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004603	Metagenome	431	Y
F024920	Metagenome	204	Y
F059873	Metagenome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102812_104822801	F059873	AGGAG	MSIEYFGVKIKATTYGDFADDVKEITHADIRLNVPCEVSKEKKFEKAKDNLLKAVIDMYALEDQNQVDVTIEYEYFGV
Ga0102812_104822802	F004603	AGGA	MIFSININGNIIDWSYNLDCQDKQYHKTWIPKLRDIQIITKDLNSLTVSEVKKIILEDIQPDITMVKEHNNKLARARRMEK*
Ga0102812_104822803	F024920	N/A	IEELLDKYHEDDFDDLLIQIIKHMKEVKELREYDEEQD*