Scaffold Ga0102812_10112967

Overview

Basic Information

• Taxon OID: 3300009086
• Scaffold ID: Ga0102812_10112967
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.713
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1490
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007770	Metagenome	345	Y
F016956	Metagenome / Metatranscriptome	243	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102812_101129672	F007770	N/A	MSGEGLTTSFRRTTQTTKSNQELLEEFQKIIYSSRVMKHMKWYGKLHSVDILEHGDDNRPQFQQEYVAIKDSFQFEISVYESWYEDADLYESHEVEDSFVSLARKFGNDNALMYFPEGFPAEWIEQEIIDGEKNWNHFNVKPDDKNIDKICDVWYRYGIMKLQAFDEEIESQLWQDAKTEIKQIKEHKYEK*
Ga0102812_101129674	F016956	N/A	TIKTWQAPKKAQLAIIDLAITHIKKVISNPEVKTEGDNFDYWNSYDLGDGNYVDYNIYCGDDWCVLKQDGSGEYEFTDPSKWSWGVACYAVDPPTKENKYHQIDTDREQYLFSYNNSYGNFEVEFENAS*