Scaffold Ga0105103_10155398

Overview

Basic Information

• Taxon OID: 3300009085
• Scaffold ID: Ga0105103_10155398
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1210
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007170	Metagenome / Metatranscriptome	356	N
F024791	Metagenome / Metatranscriptome	204	N
F058132	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105103_101553981	F007170	N/A	LTGDTTLMGLLASDNKPNGFQMAIYNTIAPQIDPISRKQPVTPYVVFDRAGSAGQDQDTLCGSRVFTYPTYRITVWDTATGAVSMASSATIMSRIDTLLDNIHVSSTTPRFYVRRESTAQTFGLESGGRTDFGVTAVYRFVTQQ*
Ga0105103_101553982	F024791	AGGAG	MPFTRTSALIGENCVVTVAFGGYQDGTPSAFTADTYTCIARSVRFSTSVNTVDVSALCDTQNKAQVTKANGSVEVEFLVDSVVGPIFFGKEGYYCQIVLTPGSITAKTFVGVVTGTGISVANEEAVTESATITLGANGVTTAWS*
Ga0105103_101553983	F058132	N/A	MALSNLKQIPKDADKGTLVVDLSSIAGDGAELRFREPKAADLFPDSKELQTLRVAFAEFPEAMLYQIYLLGRCYVPDPTDGAEESPLRAFGNLARTSKQTFFRILG