Scaffold Ga0105103_10002433

Overview

Basic Information

• Taxon OID: 3300009085
• Scaffold ID: Ga0105103_10002433
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9689
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (15.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015337	Metagenome / Metatranscriptome	255	Y
F021980	Metagenome / Metatranscriptome	216	Y
F024553	Metagenome / Metatranscriptome	205	Y
F055726	Metagenome / Metatranscriptome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105103_100024331	F015337	N/A	MKKIKMEPTEFYHFRKLAFAMSLAFGCTITQGVYIVEASIDQLEKLGY*
Ga0105103_1000243319	F024553	N/A	MGKLTKQVQEVIDKAVENLYREEIYINGRHEYDYHKHEIDKNITVHTLYFSEDEEWGESFQKKVAMQIVDNGDGIEIIGACTKKHLNYLEAEQLHILLRLASKHCVYQIAEPAPKKEF*
Ga0105103_1000243325	F055726	N/A	MDWILEDWEYPNDHIYAIEKEHDIQVAYQQWEEAQESKNRLPAIIKVQKPILIDENKLKPRTVSRAH*
Ga0105103_100024333	F021980	N/A	MNKFECSECGTKYSSPETTPPPGIKWSDGHVCTPKLVKE*