Scaffold Ga0105099_10041253

Overview

Basic Information

• Taxon OID: 3300009082
• Scaffold ID: Ga0105099_10041253
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2406
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0991
  • Long. (^o): -99.1044
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001629	Metagenome	660	Y
F065560	Metagenome	127	Y
F086806	Metagenome / Metatranscriptome	110	N
F095169	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105099_100412534	F086806	AGGAG	MSMQAELKELVTRIAPSKDIAGGFMSRNDIIQLINKVADEAVLIGWARAETLSRQRLEKKITSMEQEIEILKDRIKDLELEVIASTK*
Ga0105099_100412537	F001629	AGGCGG	MILSQGKLADGLVDELLQVIHKYDEAMYMATAIGVLELVKQQLIQESMEREDEDD*
Ga0105099_100412538	F095169	AGGA	MNWRELTIKYVKDLLRAKTPMEMAHKELIEAQHAKMQAETSVEYSQALVNYNEQRIFRLYKRINELQEFGHD*
Ga0105099_100412539	F065560	AGGAG	MIEDPEDEAFNDIERQSLWRKQAVLQAIRNENERLGLYSDLNPYRSQVIDEVADAILKMEGFGKDTLHSFAIYIKGLK*