NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0105099_10000173

Scaffold Ga0105099_10000173


Overview

Basic Information
Taxon OID3300009082 Open in IMG/M
Scaffold IDGa0105099_10000173 Open in IMG/M
Source Dataset NameFreshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P8 Core (1) Depth 1-3cm May2015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)42152
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (23.81%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Namenear Jamestown, North Dakota
CoordinatesLat. (o)47.0991Long. (o)-99.1044Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034486Metagenome / Metatranscriptome174Y
F044910Metagenome153Y
F060838Metagenome / Metatranscriptome132Y
F085177Metagenome / Metatranscriptome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0105099_1000017312F044910N/AMLQDAHSRKVSIEVEAPVGANNVIVASVPGTWLYIHELIGDLAAAGEITIKAGSRVLGEFALADGQGITLQDEPGEDNRPRFECLPGESFLMTVTGGTFKGSCHYSLRY*
Ga0105099_1000017313F085177N/AMTGTINDYAVIVNNVLKHVSPKVSPTVKPEYLDFMFKITDNQRIYSDVGVTGLGMGEIIPDGGVGASDAPIQGYSKNYTQMHFTKKVRLTFQTNFFLFESAAAKIKGSVKAKVLDGKNAIEHAKNYLGQCLLSQGFGTSFTWVPINNVGTPTPISTLGADAAAYWDATHPREDGGAAWSNVIVDVVPSPQFTYSSLLAARRQQSLKKDGRGNPLISQLDTLICRAGSTTAQYAKTIKATIDKGLAPQQTNLFNNAPATDTFKIVELSAYENLGLDGLMWGMFDSKMMNADYGFLYIESLPTRAEPAVVDALGNQDLVMNFNCLATVGASDLRGWMWSDGDGATAG*
Ga0105099_1000017318F034486GGAGMENEQTQNQKKISLATSEHAPAIILLMKDCMEQTPIIADTEWKTIVNAITLEVQSTMLRKMVDYLEEIRKGSLHEPK*
Ga0105099_1000017340F060838N/AMSTLQYVQPTEEQKAEMQSFRDKFEALFVELKARPASRGMSLCLTKFEESAMWLNKAITGND*
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