Scaffold Ga0105098_10025673

Overview

Basic Information

• Taxon OID: 3300009081
• Scaffold ID: Ga0105098_10025673
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2286
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015591	Metagenome / Metatranscriptome	253	N
F030424	Metagenome	185	N
F064670	Metagenome	128	Y
F095380	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105098_100256733	F015591	N/A	MTLTNDYEDPIAEYIEANAEGLCTSYIVIANIERISGDQSFWVTTMRNQTASTSLGLLESASAAEKYRIARSFNNRYDEDEDE*
Ga0105098_100256735	F095380	GGA	MSKDNELALDLFMLGYERNELVHMLNEANQLIESLRNELETLREQLGQ*
Ga0105098_100256737	F064670	N/A	MILSDKVAGIIKDLQVEVGVKDIALNGAMRRIEELNKQIEELVIEVAELQERLGEG*
Ga0105098_100256738	F030424	AGGAGG	MIDINQFAELELRVNDLQNALARVTEERDNLKDVSDSLFRELESCRVTLTQANSDISRLRVYLAQGAEL*