Scaffold Ga0105098_10022712

Overview

Basic Information

• Taxon OID: 3300009081
• Scaffold ID: Ga0105098_10022712
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2412
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020863	Metagenome	221	Y
F023834	Metagenome	208	Y
F026864	Metagenome	196	Y
F068766	Metagenome	124	N
F073256	Metagenome	120	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105098_1002271210	F068766	AGGAGG	MTEDNVVGFHPKNKLVNFYEIATAEGNAVWGGENPHSAVRWLRQSPLNSRLLVSCWEAGEEDARLIIEPIDITKIVFAVMAGAQ*
Ga0105098_100227123	F020863	GGAGG	MQTTIEEVRSLVATLEKLIEPLFEGEVVEDAPYESMKRPHLVLQEGSKTYGRAWRVHFTGGSKYGSGHCEPRGFSDYLGGSKAEAAHSLRKLIAGIHTGLLIAEKKEVKA*
Ga0105098_100227124	F073256	AGGAGG	VNLQEVDTIQDLKEWVEENMPGARLTVDSMGDVVIHTGLHSTMGGYLHEREEDE*
Ga0105098_100227127	F026864	AGGA	MSEQDKMAQFVFTVVVIPDNKRYEVELWDFAGAKPDLIAAGEGSNWRTALGEALSRIDLPSDKVEKTINDVIKEGVEDEGV*
Ga0105098_100227129	F023834	GAGG	MPEPTVDYWRAKAELCRDLALAQIIDGDEKMEKEAGMNLMRMTYALSMVDAFNEGGEDD*