Scaffold Ga0105098

Basic Information
Taxon OID	3300009081 Open in IMG/M
Scaffold ID	Ga0105098_10007960 Open in IMG/M
Source Dataset Name	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3859
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (18.18%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

3859

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (18.18%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location
Location Name	near Jamestown, North Dakota
Coordinates	Lat. (^o)	47.0956	Long. (^o)	-99.1001	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

near Jamestown, North Dakota

Coordinates

Lat. (^o)

47.0956

Long. (^o)

-99.1001

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014956	Metagenome / Metatranscriptome	258	Y
F031483	Metagenome	182	N
F041648	Metagenome / Metatranscriptome	159	Y
F052398	Metagenome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0105098_100079602	F052398	N/A	MNLPAIAMNIEEKIQDIQLVIDNREKRLFKTGIIESLPKINEVVKNILPLYGIDASPEHLTEVTKFITTYKLIAVDEIKLAFEKFARQELKIDEHKLYGKVDLAAIGRILTAYINWRQKVYFTVDMEDEKKRAKLQEEQRQVEAKRKFYAEFPEMLTGFKGESYEDVPAYWYDAAMEAGLIGYAEGEKRAIWEEAQEIAKKQKIQADSYIDFKTQLHRAAEESKKRAIIIAQKLAVWRIVLNKK*
Ga0105098_100079605	F041648	N/A	MNFITEKMDNLPTTLTDNALTRYYELRIKYLEGEKERLQNEARFDYLVTLDFWIYAQRMIESYVIFHKESPHEYYLDMLKTILKNLESHNEKAEDTSINRLRLEVITRCNEAIIKCEKITAAR*
Ga0105098_100079606	F014956	AGCAG	MKIQEFALNASLTVCPSHIVEPDHLKRWWRQRGVGELEKWFVSGKAVHYNDEIDWKKISNHKKQMWYDSQNFQIQAGNEYSQRKG*
Ga0105098_100079607	F031483	AGG	MNILKGKVKYTAGKVFEGQYGPSINAAITLDNGTDIRVYGKPDDNKLMALKKDDAVTIIHDGKSYKVAFDMLTANEIPEKVQTPMEQTNVQQAANVAPKTNGKLTAEEISEKATFMTGIYADIFHQLQASGLEPAQAQPAAATIFIQIGKYF*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0105098_10007960

Overview

Ecosystem & Geography

Associated Families

Sequences