Basic Information | |
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Taxon OID | 3300009081 Open in IMG/M |
Scaffold ID | Ga0105098_10007960 Open in IMG/M |
Source Dataset Name | Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3859 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (18.18%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | near Jamestown, North Dakota | |||||||
Coordinates | Lat. (o) | 47.0956 | Long. (o) | -99.1001 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F014956 | Metagenome / Metatranscriptome | 258 | Y |
F031483 | Metagenome | 182 | N |
F041648 | Metagenome / Metatranscriptome | 159 | Y |
F052398 | Metagenome | 142 | N |
Protein ID | Family | RBS | Sequence |
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Ga0105098_100079602 | F052398 | N/A | MNLPAIAMNIEEKIQDIQLVIDNREKRLFKTGIIESLPKINEVVKNILPLYGIDASPEHLTEVTKFITTYKLIAVDEIKLAFEKFARQELKIDEHKLYGKVDLAAIGRILTAYINWRQKVYFTVDMEDEKKRAKLQEEQRQVEAKRKFYAEFPEMLTGFKGESYEDVPAYWYDAAMEAGLIGYAEGEKRAIWEEAQEIAKKQKIQADSYIDFKTQLHRAAEESKKRAIIIAQKLAVWRIVLNKK* |
Ga0105098_100079605 | F041648 | N/A | MNFITEKMDNLPTTLTDNALTRYYELRIKYLEGEKERLQNEARFDYLVTLDFWIYAQRMIESYVIFHKESPHEYYLDMLKTILKNLESHNEKAEDTSINRLRLEVITRCNEAIIKCEKITAAR* |
Ga0105098_100079606 | F014956 | AGCAG | MKIQEFALNASLTVCPSHIVEPDHLKRWWRQRGVGELEKWFVSGKAVHYNDEIDWKKISNHKKQMWYDSQNFQIQAGNEYSQRKG* |
Ga0105098_100079607 | F031483 | AGG | MNILKGKVKYTAGKVFEGQYGPSINAAITLDNGTDIRVYGKPDDNKLMALKKDDAVTIIHDGKSYKVAFDMLTANEIPEKVQTPMEQTNVQQAANVAPKTNGKLTAEEISEKATFMTGIYADIFHQLQASGLEPAQAQPAAATIFIQIGKYF* |
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