Scaffold Ga0102814_10150588

Overview

Basic Information

• Taxon OID: 3300009079
• Scaffold ID: Ga0102814_10150588
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1272
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008346	Metagenome	335	Y
F013639	Metagenome / Metatranscriptome	269	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102814_101505881	F008346	N/A	PIKLKPSAKIRDRATGKTTTEHYYLKCITLSELNDYIESPSAKKKVIRKCKNEIIRRGI*
Ga0102814_101505884	F013639	GAG	MKIDKNKLEQKIKEGKSSHDIAMSYDVHPSTVRRKAKEFGLKFETQSYWRKR*