Scaffold Ga0102814_10023687

Overview

Basic Information

• Taxon OID: 3300009079
• Scaffold ID: Ga0102814_10023687
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Flood tide ETM metaG S.741
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3513
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED211 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009922	Metagenome	311	Y
F020608	Metagenome / Metatranscriptome	223	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102814_100236873	F009922	AGGAG	MENTFDINTFDKDRTSSPASFRQCQAIGYKFAKQGAKMNWKLQKQITGCLYSLAKDERLNFKKAHTLLQGKSLPKVYLDKIDHYLKEKVS*
Ga0102814_100236875	F020608	AGGAG	MKGKIKCKNPNGKSNMQVIQDSKLSALKFNSLDKVERYINELGYVFKVRNAFKEDRSVIYRHKFPKNGHVFLKSTYDFLNDNTMEMGTVWTISKF*