Scaffold Ga0115552_1153095

Overview

Basic Information

• Taxon OID: 3300009077
• Scaffold ID: Ga0115552_1153095
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 967
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026154	Metagenome / Metatranscriptome	199	Y
F050676	Metagenome / Metatranscriptome	145	N
F054358	Metagenome / Metatranscriptome	140	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115552_11530951	F026154	N/A	VAYSVGGLAVRKAWNWLIEDVDPIPGSKEFDNEYYHTKSKYIRLTKLKEEHEAYRKSRRDNS*
Ga0115552_11530952	F050676	N/A	LKLKERRIKMETKLPVKSRVADKYQPMLTYYAELIGLCHETVTKTESLKMLDPMGKKTTATSLFIRVCQRMDKSIDAKEIADKLENVSQINNQKEIA*
Ga0115552_11530953	F054358	AGGAG	MSSTKTPIRQAEMDYVDHFIETKYDDRKNTLKTEMQDIIDREAEENFEAFKNKLNINKMHKEVSVLYEDHKKFANEMDSILLEKKGKLDNAINTLEDKLEQWKKVRKWENEISRSLLKEPDELDRLLKKLCHEE