Scaffold Ga0115552_1055577

Overview

Basic Information

• Taxon OID: 3300009077
• Scaffold ID: Ga0115552_1055577
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1796
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Myoviridae sp. ctj3P51 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004220	Metagenome	448	Y
F026714	Metagenome	197	N
F043623	Metagenome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115552_10555772	F004220	GGA	MVEKDKLDWAYYFKSIPTWIRLQSKDMTEGFAVRLNDTRVRNHYTKIVNTGVEFYTCDDDDLDKEYGMYYGNLDFDPLEIMAFRNGHTKMFYKENGKWQPV*
Ga0115552_10555773	F043623	AGG	MFKRIKKTEDDPTLEQAQKFVKGWVERLVLSTGTLLVDEEARMKRGIKKNKAASFLANKDGYPEILGPAIFIPHEIKSEWY*
Ga0115552_10555775	F026714	AGGAG	MADKYKKLTIYVSEEQEKVLKDFDVMAIRKEQFPLLHYTVGLISKRLEETHNRMITDVDPNTCDQSTLHYNSQTIE*