Basic Information | |
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Taxon OID | 3300009077 Open in IMG/M |
Scaffold ID | Ga0115552_1020954 Open in IMG/M |
Source Dataset Name | Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3197 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (25.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Germany:Helgoland, sampling site Kabeltonne, North Sea | |||||||
Coordinates | Lat. (o) | 54.1883 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F018540 | Metagenome | 234 | Y |
F052601 | Metagenome | 142 | N |
F068849 | Metagenome | 124 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0115552_10209545 | F018540 | N/A | MEQLKIDWWSNFNEELYCNYLIAKDEKMNTYKILYKYYKGANTDAECCQAVKYVKAEDRQEAIKLCGLWKKLIISIEKV* |
Ga0115552_10209546 | F052601 | AGCAG | MSYEIEIEYYDQDGAIFYIGETPYQVELFIETRIIEELDSYNSFNDKLSYAQVEETYYRVQKETLRCDGVNYYNEEDLCEELEEILNKWNN* |
Ga0115552_10209548 | F068849 | N/A | MERIEKLETLTTIDEYIKYYKNRIDEREWSNEFGAGLQLQSIRKINDHDIDIYTRCIDRLNDRFRKLAITLK* |
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