Scaffold Ga0115552_1003393

Overview

Basic Information

• Taxon OID: 3300009077
• Scaffold ID: Ga0115552_1003393
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8954
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (64.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005578	Metagenome / Metatranscriptome	396	Y
F007226	Metagenome / Metatranscriptome	355	Y
F011629	Metagenome / Metatranscriptome	289	N
F024299	Metagenome / Metatranscriptome	206	Y
F076124	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115552_10033931	F076124	N/A	MENNELRDMMGSPFKVGSPCVWTTHNFQWIGTIKKVCKSRVRVSPLPGSTRYTRYEGLPFPEKVIQLDSMPKSALF
Ga0115552_100339310	F024299	GGAG	MLNTQANNTKIKTVTTRDGDIAVQLEIDLAQHNLQVNGRKVESITMYADAECSGDLAVNWEEEDDSNYVHNSSMLMRDTSDSNNNTDTMGQFYWDSCFDDTLVQLLQENGFSKSASEDVCGSEWGMQDVGRASYDAFAIATEILAAHNIVCEEA*
Ga0115552_100339312	F007226	GGA	MYITIKHKERNMQKLLNKITFYFLNRAFTQMEQSNDLQNDDKVAEHIEDYYTYFVK*
Ga0115552_100339313	F011629	GGAG	MLNTTQVKDLVKQRFGGSLKQVYLNKCYSNKQEIADKRNMAFAVDGDVYTNVDLTALAKEIGCKRIKLHAAFLRGMQSGAWLRLIHVHYACKNN*
Ga0115552_100339314	F005578	N/A	MNYKVNLVSDEDFAYDEDGGYNCYDWVAATDELCAQTAAVLDSYFNKKDTSAATALAHAIDYRYDDDCINEGISEHFYDYCKQHNCMQLYYKQADAHDYDGEDAALRM*