Scaffold Ga0115552_1002572

Overview

Basic Information

• Taxon OID: 3300009077
• Scaffold ID: Ga0115552_1002572
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_110328
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10343
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (64.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033639	Metagenome / Metatranscriptome	177	N
F033826	Metagenome / Metatranscriptome	176	Y
F089555	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115552_100257210	F033826	AGGAG	MALCSVSDVQQFLQVDLNSTVEASVTNTFIPYVDAAIKRYLGHDVEQATYTEVFDGAEQQDLFLRHIPIASITTVTEDSNTLVSGNEKDYVHYDNGRLRRIVVRWSGIKPKNISVTYVGGYQSADIPEQIKQTSARASGRLLLTSLQNSAKADTGQISSHLSDNTTPTNFDIALSERIGDYDIAFADVVVQNLQPVLTNADMAILNPFKSRFFV*
Ga0115552_10025722	F033639	AGGAG	MSYSTTGTISEVLIGTGVLYIKDASTTSLAFPGDDTNNFDNPTGMTVAWDQVGYSEDGWTLEVDKTFEDVMVAEELDPIKTLKSAQEVRLTGELAQASLTNFQVAMGGGSTSADEIGAGASGAAGTSVTGYHTYKPPTSDGFTEYSLILHADGQAGSDRQFWMPRTVNTGSFSMAHQKAPNKVTLATEFKLLVPESTGLNVGSDATGNYYLYVVVENRNDSDELDIN*
Ga0115552_10025726	F089555	N/A	MPLRHRFLPETCTIQSVSETNLDERGLPSDDWADATINVKSKFESRGSQEDRDGRNTTIESFNVYVEKGVSVVPGDRLVRGSQYHEILIVTPYLDRYGVECYKQLQTLVRT*