Scaffold Ga0115550_1050381

Overview

Basic Information

• Taxon OID: 3300009076
• Scaffold ID: Ga0115550_1050381
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1711
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC203P (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001702	Metagenome	649	Y
F013705	Metagenome	269	N
F079324	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115550_10503811	F001702	N/A	WTPYRDEIFDMNKKDEKRHRFNRPSSDFEASINDCAKMFTVKNIAESLLNIEKWKVKDLINIRKSALYSQSVVENYKDRILDAWKDEDLKYLSNLDYIALIDWKHYTEIQQRKVA*
Ga0115550_10503815	F013705	AGG	MTNKLQNKIDELIKLEELHNIKEQYRQHEKTKSLYEQIDFKPIPQEIMDQCNNEWEGE*
Ga0115550_10503816	F079324	GGA	MKYNKKMFLDYASAFDYTEDFYNNAKENHGKPITWEQAIKENDEFMKSMNSWNLKDFQEWFDFRKFEI*