Scaffold Ga0115550_1012295

Overview

Basic Information

• Taxon OID: 3300009076
• Scaffold ID: Ga0115550_1012295
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4484
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015990	Metagenome	250	N
F022856	Metagenome	212	Y
F083372	Metagenome	113	N
F087206	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115550_10122954	F083372	GAGG	MIMQQYKISYPRAEFCYARHIRDNLKHEGEIIYPHEPSSRLLEDGTWLLITITGERLGTVSPSGTVRLT*
Ga0115550_10122955	F087206	AGGA	MSNQYNEQELENIQSYVLEQDRKGLLENDIRDICFMYGLHPDDDRDEILEYIAESIFYEQTIGDLV*
Ga0115550_10122956	F015990	AGGAG	MGKGSGRRKEDINKIRNNWDSIFKKRDKKQITKVIIEFEMPGYPSIDEINNHVQELLINNKLESKTTTRNV*
Ga0115550_10122959	F022856	N/A	MTNFKLIVGNFRDILGKLRDILYTQMPKTRVGDAHISMYIHIHRRANPWRGFDSPESAHACAGER*