Scaffold Ga0115550_1004920

Overview

Basic Information

• Taxon OID: 3300009076
• Scaffold ID: Ga0115550_1004920
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8144
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (61.90%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051545	Metagenome	144	N
F077795	Metagenome	117	N
F089423	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115550_10049203	F089423	GAGG	MARHAKYFDKDLYSKFHRKHDGIAMCDVDSVEICQNKGCWYPLAIIEHLYDTGSTKKKYTTIVEHIGKALNVPVFLVYYKEATTDTLMFRVAQVHPIKTPLNTHCETEWVDILRSIQLKHQEVCKYAK*
Ga0115550_10049205	F077795	N/A	MEKISIEKECSIYFLFNKNKIVYIGETSVEKGKRIHQHKDKFFNSYSEINGNKISFINNIFFRKYYELRLINKFKPKYNKEKTTAPTLNEFICKMFLWYENPNPTFITPLTAYNQIKYNKYLEYKTKQRKLKKVLNQYTNVWKDLDMSKKLYIDNQNAFTFLIKETMKPSNNYSIKFTPRKERLHN*
Ga0115550_10049206	F051545	GAGG	MTNTGMFEDAERIEYLEEQNKLLKKKLRESINAKVIDTLETDIGIKDWHINKLKDEIKELKEALEKTE*