Scaffold Ga0115550_1000916

Overview

Basic Information

• Taxon OID: 3300009076
• Scaffold ID: Ga0115550_1000916
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100511
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23346
• Total Scaffold Genes: 39
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (79.49%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002716	Metagenome / Metatranscriptome	535	Y
F009521	Metagenome / Metatranscriptome	316	Y
F018155	Metagenome / Metatranscriptome	236	Y
F024920	Metagenome	204	Y
F058166	Metagenome / Metatranscriptome	135	N
F080492	Metagenome	115	N
F094536	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115550_100091612	F094536	AGG	MRITVKDNLKDLRKQLDKDLNKRDFNKIMARAMNYTGERVVNAERSHLKDKLDNPRPQTVKSVVISNFAKPRSNRLATRVIVKDWAVKFLHYIYTGENEPARRQKYASPTKDGEYKKGKYGNIMKLSAKGGLLSRVDKTKDSQRKGSRFQGVPKGEGSKTYGIWERQGKKGREGLKLLVAFTPFIKHRKFIDFYKVGEKVIKSTLHREINRQFARHLKR*
Ga0115550_100091617	F024920	GGAG	MIEELLDKYHEDDFDDLLIEIIKHMQEQKETREQD*
Ga0115550_10009162	F018155	GGAG	MGQNSKAVAKRREELKNEKLDKQIAYYYFQKGAGTHYREIKYQSGRVVRTDFDA*
Ga0115550_100091621	F009521	N/A	MKYKIIINNGTLKGFLAFRGSCLATMQDKFKRLELQGHKLKLIRGK*
Ga0115550_100091623	F080492	N/A	MFNIYKEKINMSKVHHTQYKKNYKKYILECLETEDELIGKNLSDDEKINYLFDRFGNEYGFQIERIGEYRAMTEWLSGLAINIPYTYSDIIELAIDMGSIDNNPSEALKDRVIENYFSFMASVILSFKHKWVA*
Ga0115550_100091631	F002716	GAGG	MSQFRLETELDMAGYLDINFGHGVSAVYTNSVTSTTINVILNNEYVEQEEGIGVEALKPIAYCRTIDIPNIAFGNTLDISAIKDTNGNILKAAQNYTVVNIQSDRTGFSALMLEEI*
Ga0115550_10009166	F058166	AGGAG	MDILGGMSNSTEGQQVYLAFKTADQQFFVNGKTPIDFKYLQLDPATFKSGWGRYAGEYQYVWDDNFGKASTKPGDDCKRAFSCCVMPHGHEHALIWSRFTFAESSAFNKILSSFWNQMDASSDSLPVVEYKGSKEIQVGIGRSSELTFEFSKFTPRFDNFVIPSFYGKEDEEVEDTFKSPNDGLAEKVQEMVDKNELSDDDIPF*