Scaffold Ga0105090_10000376

Overview

Basic Information

• Taxon OID: 3300009075
• Scaffold ID: Ga0105090_10000376
• Source Dataset Name: Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 1-3cm March2015
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21534
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (27.27%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment → Freshwater Sediment Microbial Communities From Cottonwood Lakes Research Site Near Jamestown, North Dakota, Usa

Source Dataset Sampling Location

• Location Name: near Jamestown, North Dakota
• Coordinates
  • Lat. (^o): 47.0956
  • Long. (^o): -99.1001
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005050	Metagenome / Metatranscriptome	413	Y
F008936	Metagenome	325	Y
F024730	Metagenome / Metatranscriptome	204	Y
F030677	Metagenome	184	Y
F061575	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105090_100003761	F061575	N/A	MSVCSPCFDSGISVAACNAGIAFGVVPAESNYVVRITHNATKKVQQFNVASDVDGIITIIGAKIDAMQGYTIALQGCEKFTICEVEYDCISFSVVNMDVDEPETINLLECVSC*
Ga0105090_1000037613	F008936	AGGAG	MASFDSLVRDKIALFESVPEKLATAAQKTQAEIWRKIRPILEDMDVTAAGNIEQTEGNIRRIALISDELKKVLAGGEYREAVRAFLGSIDEGVQLTNEIARTFESAFEPTEVQKQLLQISKQNAINTFFGAGLDARFTQPFLEQLTTNIAARSPLRETVAALEGIVTGTEANDGRLLANIKTTATTAQAVADRSYSAAVNDELGIEWFEYLGGEIPTTRPFCEHREGEIFHRKEIEAWGDGKNSGGIRDIRDGTWAGRIDGTDSKSIFTLVGGWNCRHYLVPVPDRKVPETVKARARAEGFI*
Ga0105090_1000037619	F024730	N/A	MCIESLLGLRGCESPEPSTGLYIDDLGINQTFLGQLITDQYNNGVELFEDKRAFAWRKISSDVLTKLSPMMKSDTVIENKRVGQVVSNYSNVQTALGAGNYGGIRLKIDPNTVSYLNFYLADINLAIASSNVNVPVLIFDMTTGKLIQSLTYAEGALDQFIGKTLTSAKRKLDIAIVYESTMNTVKFTPKRGTCTSCGGGPRESHICPFVDAIGIELTTDGTNVLTSSSSRYTTGMSLTYSINCDRQGWMCSIGGLMALPLAYATAVEIYNYALTVSPNQRVNTTVIVNRGQNKAELMDGIMAARDIAATRYGEELGAMLQNMRLPDDTHCWDCKRNMKYVTALP*
Ga0105090_1000037620	F030677	N/A	MPTPAEIQKNLDILYEGWTSKFTPLYVAVRELKRIMFKRIFGTGSSGGTNTAGEKLPTKPYSTKPIYVSPRALASAPSKYKVGKRGEPIESLYFQGGYAELKKGTSRKLPLELTGKLKGGFLSEEVITEGLEAAIALPGSETGKVDGLEAKYGIIFLPTKEEQEAMLEEHAQLLVEQIINAMNKS*
Ga0105090_100003768	F005050	N/A	MACVSYCDSSLLDHNLVNCNEYKLGGVSAIIVGACGTELVNPEDEAALEALLLNGTAKLIEDIRFALPAGSPVTVDSPIGCGTPIRINEDRTATLFDANVTDENNTFWNDVNNRRIAWILAYMCDSGKVIYIDPPQGLTTSANFILPEQNNELQRYEVTFSWRDKNIPTQYEAPAGIFG*