Scaffold Ga0115549_1271992

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0115549_1271992

Scaffold Ga0115549_1271992

Overview

Basic Information
Taxon OID	3300009074 Open in IMG/M
Scaffold ID	Ga0115549_1271992 Open in IMG/M
Source Dataset Name	Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	535
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location Name	Germany:Helgoland, sampling site Kabeltonne, North Sea
Coordinates	Lat. (^o)	54.1883	Long. (^o)	7.9	Alt. (m)		Depth (m)	1
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022079	Metagenome	216	Y
F033955	Metagenome	176	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115549_12719921	F022079	N/A	DNMKQYANYVVITDDKGKKRAFYNFHELIKYLDSFKMSFLPDDFTYTIHED*
Ga0115549_12719922	F033955	AGAAGG	MKVVRIDLQGACEPMEFESKKALREYLIDFHLQDYHEKDEYGVEDIKLIKSFSLDQICDYFDWGYEQAKG*

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