NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0115549_1027744

Scaffold Ga0115549_1027744


Overview

Basic Information
Taxon OID3300009074 Open in IMG/M
Scaffold IDGa0115549_1027744 Open in IMG/M
Source Dataset NamePelagic marine microbial communities from North Sea - COGITO_mtgs_100430
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2166
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameGermany:Helgoland, sampling site Kabeltonne, North Sea
CoordinatesLat. (o)54.1883Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023485Metagenome210N
F044794Metagenome154N
F081884Metagenome114N

Sequences

Protein IDFamilyRBSSequence
Ga0115549_10277441F081884N/ARLKNYEEAENFLKTTDYIHSDHFKEYKGDTFPNLEMPWHLELEYWIDQNGYHDHFLIIKSKPKREYPHVNATDRNCLPGDDEEKMMDFDHYLPGTRIDESWFKYSPYYLNRCSYEFVGFKKYYFERDLGTEEKKKLKRDHSEVVEHESSESDYRNREAV*
Ga0115549_10277444F044794AGGAMGRKTPLKERLLREYARLSKIALREPRNGKEVFTRMRWEKIRNILWRRYDYMQSL*
Ga0115549_10277446F023485AGGAMYTQLPESPVRKVYKCRHCGDVSIKFYNPKHDRVYTAEEWEVIMTDGRQALDRALRLVRDDPKMFS*

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.