Scaffold Ga0115549_1027744

Overview

Basic Information

• Taxon OID: 3300009074
• Scaffold ID: Ga0115549_1027744
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2166
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023485	Metagenome	210	N
F044794	Metagenome	154	N
F081884	Metagenome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0115549_10277441	F081884	N/A	RLKNYEEAENFLKTTDYIHSDHFKEYKGDTFPNLEMPWHLELEYWIDQNGYHDHFLIIKSKPKREYPHVNATDRNCLPGDDEEKMMDFDHYLPGTRIDESWFKYSPYYLNRCSYEFVGFKKYYFERDLGTEEKKKLKRDHSEVVEHESSESDYRNREAV*
Ga0115549_10277444	F044794	AGGA	MGRKTPLKERLLREYARLSKIALREPRNGKEVFTRMRWEKIRNILWRRYDYMQSL*
Ga0115549_10277446	F023485	AGGA	MYTQLPESPVRKVYKCRHCGDVSIKFYNPKHDRVYTAEEWEVIMTDGRQALDRALRLVRDDPKMFS*