Scaffold Ga0115549_1023102

Overview

Basic Information

• Taxon OID: 3300009074
• Scaffold ID: Ga0115549_1023102
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2441
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F029404	Metagenome	188	N
F040869	Metagenome	161	N
F105877	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115549_10231023	F105877	GAGG	MSNHENEMLKENIFDLWVEYLELDGWPKGCNETYEEAARRTESEWLEMS*
Ga0115549_10231026	F029404	GGAGG	MKTVDFVEIELGGDNWKITWDVNNRKKIKTTGERHGLKYTIYSLTNLTPAQAYDIAMVQLEWLKKEQSYVI*
Ga0115549_10231028	F040869	AGGAG	MNMKVFKQVYNELSLLQEEDTDDLNIAEESLMAAMTFTMTNAPSVLNGLCLISNTFNGILAEYTLKDIQLKGE*