Scaffold Ga0115549_1017572

Overview

Basic Information

• Taxon OID: 3300009074
• Scaffold ID: Ga0115549_1017572
• Source Dataset Name: Pelagic marine microbial communities from North Sea - COGITO_mtgs_100430
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2915
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location

• Location Name: Germany:Helgoland, sampling site Kabeltonne, North Sea
• Coordinates
  • Lat. (^o): 54.1883
  • Long. (^o): 7.9
  • Depth (m): 1

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008882	Metagenome / Metatranscriptome	326	N
F038638	Metagenome / Metatranscriptome	165	Y
F054415	Metagenome / Metatranscriptome	140	N
F055270	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0115549_101757211	F038638	AGG	MSYEIAEYKYINHMKDRYGLRGDLEYPARTRSVEDYEGNWLLVSPQGIKMGKVFKNGDIIA*
Ga0115549_10175722	F055270	AGGTGG	MELLHNREFKYYDKNADSVDMVNYIKTIMARNFIEEIYSLCLDYPKQFNQALSEIEYLYSKKLNAFVYPPKDYIQYKQGQELLREVTQ*
Ga0115549_10175724	F008882	GAGG	MSVTQYNFKKPKINRQELELLNWFLAHTNDNPLINAEALDLFKANGYSAMNYQDLVNKIKTILKTYKTKGGI*
Ga0115549_10175726	F054415	AGGAG	MTEHTNQVEQQRERLKAEALDNQVTALEIRAGRIQTWYESGRVVTEYPRDKRKKTITDHRGIK*